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1

Japanese domesticated chickens have been derived from Shamo traditional fighting cocks

Tomoyoshi Komiyama, Kazuho Ikeo, Yoshio Tateno, Takashi Gojobori

Journal:

Molecular Phylogenetics and Evolution

Year:

2004

Language:

english

File:

PDF, 744 KB

english, 2004

2

Structural adaption of extremophile proteins to the environments with special reference to hydrophobic networks

Ueno, Keisuke, Ibarra, Martin, Gojobori, Takashi

Journal:

Ecological Genetics and Genomics

Year:

2016

Language:

english

File:

PDF, 844 KB

english, 2016

3

Marine Metagenomics (Technological Aspects and Applications) || Horizontal Gene Transfer in Marine Environment: A Technical Perspective on Metagenomics

Gojobori, Takashi, Wada, Tokio, Kobayashi, Takanori, Mineta, Katsuhiko

Year:

2019

Language:

english

File:

PDF, 632 KB

english, 2019

4

Classification, nomenclature, and database development for hepatitis C virus (HCV) and related viruses: proposals for standardization

B. Robertson, G. Myers, C. Howard, T. Brettin, J. Bukh, B. Gaschen, T. Gojobori, G. Maertens, M. Mizokami, O. Nainan, S. Netesov, K. Nishioka, T. Shin-i, P. Simmonds, D. Smith, L. Stuyver, A. Weiner

Journal:

Archives of Virology

Year:

1998

Language:

english

File:

PDF, 81 KB

english, 1998

5

Dynamic Evolution of Genomes and the Concept of Genome Space

MATTHEW I. BELLGARD, TAKESHI ITOH, HIDEMI WATANABE, TADASHI IMANISHI, TAKASHI GOJOBORI

Journal:

Annals of the New York Academy of Sciences

Year:

1999

File:

PDF, 1.33 MB

1999

6

Part VI. Introduction

TAKASHI GOJOBORI

Journal:

Annals of the New York Academy of Sciences

Year:

1999

File:

PDF, 123 KB

1999

7

Part VI. Summary

TAKASHI GOJOBORI

Journal:

Annals of the New York Academy of Sciences

Year:

1999

File:

PDF, 293 KB

1999

8

The evolutionary origin of long-crowing chicken: its evolutionary relationship with fighting cocks disclosed by the mtDNA sequence analysis

Tomoyoshi Komiyama, Kazuho Ikeo, Takashi Gojobori

Journal:

Year:

2004

Language:

english

File:

PDF, 896 KB

english, 2004

9

Evolutionary origin of sex-related genes in the mouse brain

Kazuya Yuge, Kazuho Ikeo, Takashi Gojobori

Journal:

Year:

2007

Language:

english

File:

PDF, 227 KB

english, 2007

10

An evolutionary origin and selection process of goldfish

Tomoyoshi Komiyama, Hiroyuki Kobayashi, Yoshio Tateno, Hidetoshi Inoko, Takashi Gojobori, Kazuho Ikeo

Journal:

Year:

2009

Language:

english

File:

PDF, 959 KB

english, 2009

11

Molecular evolutionary analyses implicate injection treatment for schistosomiasis in the initial hepatitis C epidemics in Japan

Yasuhito Tanaka, Kousuke Hanada, Etsuro Orito, Yoshihiro Akahane, Kazuaki Chayama, Hiroshi Yoshizawa, Michio Sata, Nobuo Ohta, Yuzo Miyakawa, Takashi Gojobori, Masashi Mizokami

Journal:

Journal of Hepatology

Year:

2005

Language:

english

File:

PDF, 262 KB

english, 2005

12

Proteomic signatures and aberrations of mouse embryonic stem cells containing a single human chromosome 21 in neuronal differentiation: An in vitro model of down syndrome

M. Kadota, R. Nishigaki, C.C. Wang, T. Toda, Y. Shirayoshi, T. Inoue, T. Gojobori, K. Ikeo, M.S. Rogers, M. Oshimura

Journal:

Year:

2004

Language:

english

File:

PDF, 464 KB

english, 2004

13

Obituary - Susumu Ohno 1928-2000

Takashi Gojobori

Journal:

Year:

2000

Language:

english

File:

PDF, 42 KB

english, 2000

14

Where is the origin of the Japanese gamecocks?

Tomoyoshi Komiyama, Kazuho Ikeo, Takashi Gojobori

Journal:

Year:

2003

Language:

english

File:

PDF, 653 KB

english, 2003

15

HLA Genes and Haplotypes in Ryukyuans Suggest Recent Gene Flow to the Okinawa Islands

YOKO HATTA, JUN OHASHI, TADASHI IMANISHI, HARUO KAMIYAMA, MASAHARU IHA, TSUYOSHI SIMABUKURO, ATSUKO OGAWA, HIDENORI TANAKA, TATSUYA AKAZA, TAKASHI GOJOBORI, TAKEO JUJI and KATSUSHI TOKUNAGA

Journal:

Year:

1999

Language:

english

File:

PDF, 842 KB

english, 1999

16

Modeling Planarian Regeneration: A Primer for Reverse-Engineering the Worm

Lobo, Daniel, Beane, Wendy S., Levin, Michael, Gojobori, Takashi

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 1.84 MB

english, 2012

17

Complete mitogenome analysis of indigenous populations in Mexico: its relevance for the origin of Mesoamericans

Mizuno, Fuzuki, Gojobori, Jun, Wang, Li, Onishi, Keisuke, Sugiyama, Saburo, Granados, Julio, Gomez-Trejo, Celta, Acuña-Alonzo, Víctor, Ueda, Shintaroh

Journal:

Journal of Human Genetics

Year:

2014

Language:

english

File:

PDF, 1.39 MB

english, 2014

18

Eye-like ocelloids are built from different endosymbiotically acquired components

Gavelis, Gregory S., Hayakawa, Shiho, White III, Richard A., Gojobori, Takashi, Suttle, Curtis A., Keeling, Patrick J., Leander, Brian S.

Journal:

Year:

2015

Language:

english

File:

PDF, 8.05 MB

english, 2015

19

An Autosomal Analysis Gives No Genetic Evidence for Complex Speciation of Humans and Chimpanzees

Yamamichi, M., Gojobori, J., Innan, H.

Journal:

Molecular Biology and Evolution

Year:

2012

Language:

english

File:

PDF, 699 KB

english, 2012

20

Single-cell technologies in environmental omics

Kodzius, Rimantas, Gojobori, Takashi

Journal:

Year:

2015

Language:

english

File:

PDF, 1.15 MB

english, 2015

21

Marine metagenomics as a source for bioprospecting

Kodzius, Rimantas, Gojobori, Takashi

Journal:

Marine Genomics

Year:

2015

Language:

english

File:

PDF, 1.01 MB

english, 2015

22

The origin and evolution of Ebola and Marburg viruses

Suzuki, Y., Gojobori, T.

Journal:

Molecular Biology and Evolution

Year:

1997

Language:

english

File:

PDF, 1022 KB

english, 1997

23

Deep sequencing of HBV pre-S region reveals high heterogeneity of HBV genotypes and associations of word pattern frequencies with HCC

Bai, Xin, Jia, Jian-an, Fang, Meng, Chen, Shipeng, Liang, Xiaotao, Zhu, Shanfeng, Zhang, Shuqin, Feng, Jianfeng, Sun, Fengzhu, Gao, Chunfang, Gojobori, Takashi

Journal:

Year:

2018

Language:

english

File:

PDF, 6.32 MB

english, 2018

24

Comparative genome and transcriptome analysis of diatom, Skeletonema costatum, reveals evolution of genes for harmful algal bloom

Ogura, Atsushi, Akizuki, Yuki, Imoda, Hiroaki, Mineta, Katsuhiko, Gojobori, Takashi, Nagai, Satoshi

Journal:

Year:

2018

Language:

english

File:

PDF, 3.66 MB

english, 2018

25

Functional Pangenome Analysis Shows Key Features of E Protein Are Preserved in SARS and SARS-CoV-2

Alam, Intikhab, Kamau, Allan A., Kulmanov, Maxat, Jaremko, Åukasz, Arold, Stefan T., Pain, Arnab, Gojobori, Takashi, Duarte, Carlos M.

Journal:

Frontiers in Cellular and Infection Microbiology

Year:

2020

File:

PDF, 1.15 MB

2020

26

Ascidian tyrosinase gene: Its unique structure and expression in the developing brain

Shigeru Sato, Hiroshi Masuya, Takaharu Numakunai, Noriyuki Satoh, Kazuho Ikeo, Takashi Gojobori, Koji Tamura, Hiroyuki Ide, Takuji Takeuchi, Hiroaki Yamamoto

Journal:

Developmental Dynamics

Year:

1997

Language:

english

File:

PDF, 415 KB

english, 1997

27

Structure and developmental expression of the ascidian TRP gene: Insights into the evolution of pigment cell–specific gene expression

Shigeru Sato, Reiko Toyoda, You Katsuyama, Hidetoshi Saiga, Takaharu Numakunai, Kazuho Ikeo, Takashi Gojobori, Ichiro Yajima, Hiroaki Yamamoto

Journal:

Developmental Dynamics

Year:

1999

Language:

english

File:

PDF, 552 KB

english, 1999

28

A web-based interactive developmental table for the ascidian Ciona intestinalis, including 3D real-image embryo reconstructions: I. From fertilized egg to hatching larva

Kohji Hotta, Kenta Mitsuhara, Hiroki Takahashi, Kazuo Inaba, Kotaro Oka, Takashi Gojobori, Kazuho Ikeo

Journal:

Developmental Dynamics

Year:

2007

Language:

english

File:

PDF, 1.79 MB

english, 2007

29

Effect of immunochemotherapy on lymphocyte response of patients with gastrointestinal cancer

Harukazu Mashiba, Hirokuni Yoshinaga, Keiko Matsunaga, Mariko Gojobori, Motonosuke Furusawa

Journal:

Journal of Surgical Oncology

Year:

1979

Language:

english

File:

PDF, 234 KB

english, 1979

30

Low genetic diversities of rabies virus populations within different hosts in Brazil

Yuki Kobayashi, Yoshiyuki Suzuki, Takuya Itou, Adolorata A.B. Carvalho, Elenice M.S. Cunha, Fumio H. Ito, Takashi Gojobori, Takeo Sakai

Journal:

Infection, Genetics and Evolution

Year:

2010

Language:

english

File:

PDF, 191 KB

english, 2010

31

Molecular characterization of the developmental gene in eyes: Through data-mining on integrated transcriptome databases

K.W. Choy, C.C. Wang, A. Ogura, T.K. Lau, M.S. Rogers, K. Ikeo, T. Gojobori, L.Y. Tang, D.S.C. Lam, T.K.H. Chung, C.P. Pang

Journal:

Clinical Biochemistry

Year:

2006

Language:

english

File:

PDF, 358 KB

english, 2006

32

Comparative study of flux redistribution of metabolic pathway in glutamate production by two coryneform bacteria

Tomokazu Shirai, Akinori Nakato, Noriyuki Izutani, Keisuke Nagahisa, Suteaki Shioya, Eiichiro Kimura, Yutaka Kawarabayasi, Akihiko Yamagishi, Takashi Gojobori, Hiroshi Shimizu

Journal:

Metabolic Engineering

Year:

2005

Language:

english

File:

PDF, 342 KB

english, 2005

33

Functional Conservation of the Promoter Regions of Vertebrate Tyrosinase Genes

Sato, Shigeru, Tanaka, Mika, Miura, Hirohito, Takeuchi, Takuji, Yamamoto, Hiroaki, Ikeo, Kazuho, Gojobori, Takashi

Journal:

JID Symposium Proceedings

Year:

2001

Language:

english

File:

PDF, 595 KB

english, 2001

34

Up-regulation of human T lymphotropic virus type 1 (HTLV-1) tax/rex mRNA in infected lung tissues

M. Seki, Y. Higashiyama, A. Mizokami, J.-I. Kadota, R. Moriuchi, S. Kohno, Y. Suzuki, K. Takahashi, T. Gojobori, S. Katamine

Journal:

Clinical & Experimental Immunology

Year:

2000

Language:

english

File:

PDF, 413 KB

english, 2000

35

Dissecting planarian central nervous system regeneration by the expression of neural-specific genes

Francesc Cebrià, Masumi Nakazawa, Katsuhiko Mineta, Kazuho Ikeo, Takashi Gojobori, Kiyokazu Agata

Journal:

Development, Growth & Differentiation

Year:

2002

Language:

english

File:

PDF, 1.61 MB

english, 2002

36

Microarray analysis of embryonic retinoic acid target genes in the ascidian Ciona intestinalis

Tomoko Ishibashi, Masumi Nakazawa, Hiroaki Ono, Nori Satoh, Takashi Gojobori, Shigeki Fujiwara

Journal:

Development, Growth & Differentiation

Year:

2003

Language:

english

File:

PDF, 760 KB

english, 2003

37

Notes on the Maximum Likelihood Estimation of Haplotype Frequencies

S. Mano, N. Yasuda, T. Katoh, K. Tounai, H. Inoko, T. Imanishi, G. Tamiya, T. Gojobori

Journal:

Annals of Human Genetics

Year:

2004

Language:

english

File:

PDF, 114 KB

english, 2004

38

Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tickRhipicephalus (Boophilus) microplus

Roberto A Barrero, Gabriel Keeble-Gagnère, Bing Zhang, Paula Moolhuijzen, Kazuho Ikeo, Yoshio Tateno, Takashi Gojobori, Felix D Guerrero, Ala Lew-Tabor, Matthew Bellgard

Journal:

Year:

2011

Language:

english

File:

PDF, 3.44 MB

english, 2011

39

Binary classification of protein molecules into intrinsically disordered and ordered segments

Satoshi Fukuchi, Kazuo Hosoda, Keiichi Homma, Takashi Gojobori, Ken Nishikawa

Journal:

BMC Structural Biology

Year:

2011

Language:

english

File:

PDF, 1.15 MB

english, 2011

40

Development of an accurate classification system of proteins into structured and unstructured regions that uncovers novel structural domains: its application to human transcription factors

Satoshi Fukuchi, Keiichi Homma, Yoshiaki Minezaki, Takashi Gojobori, Ken Nishikawa

Journal:

BMC Structural Biology

Year:

2009

Language:

english

File:

PDF, 738 KB

english, 2009

41

Cancer-related mutations in BRCA1-BRCT cause long-range structural changes in protein–protein binding sites: A molecular dynamics study

Craig A. Gough, Takashi Gojobori, Tadashi Imanishi

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.64 MB

english, 2007

42

Evolutionary origin of a Kunitz-type trypsin inhibitor domain inserted in the amyloid β precursor protein of Alzheimer's disease

Kazuho Ikeo, Kei Takahashi, Takashi Gojobori

Journal:

Journal of Molecular Evolution

Year:

1992

Language:

english

File:

PDF, 716 KB

english, 1992

43

Six strains of human immunodeficiency virus type 1 isolated in Japan and their molecular phylogeny

Nobuaki Shimizu, Yashuhiro Takeuchi, Takuji Naruse, Minoru Inagaki, Etsuko Moriyama, Takashi Gojobori, Hiroo Hoshino

Journal:

Journal of Molecular Evolution

Year:

1992

Language:

english

File:

PDF, 720 KB

english, 1992

44

Different evolutionary histories of kringle and protease domains in serine proteases: A typical example of domain evolution

Kazuho Ikeo, Kei Takahashi, Takashi Gojobori

Journal:

Journal of Molecular Evolution

Year:

1995

Language:

english

File:

PDF, 551 KB

english, 1995

45

Reduction of synonymous substitutions in the core protein gene of hepatitis C virus

Yasuo Ina, Masashi Mizokami, Kenichi Ohba, Takashi Gojobori

Journal:

Journal of Molecular Evolution

Year:

1994

Language:

english

File:

PDF, 690 KB

english, 1994

46

Patterns of nucleotide substitutions inferred from the phylogenies of the class I major histocompatibility complex genes

Tadashi Imanishi, Takashi Gojobori

Journal:

Journal of Molecular Evolution

Year:

1992

Language:

english

File:

PDF, 923 KB

english, 1992

47

Isolation and characterization of cDNA clones for Japanese quail (Coturnix japonica) major histocompatibility complex (MhcCoja) class I molecules

Takashi Shiina, Asako Ando, Tadashi Imanishi, Hisako Kawata, Kei Hanzawa, Takashi Gojobori, Hidetoshi Inoko, Seiki Watanabe

Journal:

Year:

1995

Language:

english

File:

PDF, 394 KB

english, 1995

48

Mitochondrial DNA polymorphism in Japanese

Satoshi Horai, Takashi Gojobori, Ei Matsunaga

Journal:

Year:

1984

Language:

english

File:

PDF, 1.30 MB

english, 1984

49

Inter-RNA homology and possible roles of small RNAs

Takashi Gojobori, Masatoshi Nei

Journal:

Journal of Molecular Evolution

Year:

1981

Language:

english

File:

PDF, 660 KB

english, 1981

50

Patterns of nucleotide substitution in pseudogenes and functional genes

Takashi Gojobori, Wen-Hsiung Li, Dan Graur

Journal:

Journal of Molecular Evolution

Year:

1982

Language:

english

File:

PDF, 1.14 MB

english, 1982